SLIMED/Run__simulation_8hpp_source.html

#include <cmath>

#include <fstream>

#include <iomanip>

#include <iostream>

#include <numeric>   // for accumulate vector

#include <algorithm>

// linear algebra

#include "linalg/Linear_algebra.hpp"

// triangular mesh

#include "mesh/Vertex.hpp"

#include "mesh/Face.hpp"

#include "mesh/Mesh.hpp"

#include "energy_force/Energy.hpp"

#include "energy_force/Force.hpp"

#include "mesh/Gauss_quadrature.hpp"

#include "model/Model.hpp"

#include "model/Record.hpp"

#include "Dynamics.hpp"

// io

#include "io/io.hpp"

// parameters

#include "Parameters.hpp"


using namespace std;


void run_flat(std::string param_filename);


void run_dynamics_flat(std::string param_filename);

Dynamics.hpp
This file defines dynamic mesh class that inherits mesh with support of time-resolved dynamics.

Energy.hpp
This file defines the Energy class with scaffold extensions.

Face.hpp
This file defines the face class, which is the triangular element defined by vertices.

Force.hpp
The Force class defines corresponding force terms type. Note that all the forces are gsl matrices wit...

Gauss_quadrature.hpp
This file defines gauss quadrature and related functions.

Linear_algebra.hpp

Mesh.hpp
This file defines mesh class containing a vector of vertices and a vector of faces that are required ...

Model.hpp
Contains the Model class, which encapsulates a mesh and a record object.

Parameters.hpp
This file defines essential parameters used in continuum membrane as well as membrane dynamics code....

Record.hpp

run_dynamics_flat
void run_dynamics_flat(std::string param_filename)
Run membrane dynamics model on a flat membrane.

run_flat
void run_flat(std::string param_filename)
Run continuum membrane model on a flat membrane.

Vertex.hpp
This file defines the Vertex class which includes information of coordinate and forces exerted at a v...

io.hpp
Manage io of continuum membrane model, including parameter files, vertices and faces,...